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  5. Transcript_contig_55857

Transcript_contig_55857 (55857)


Aliases : 55857

Description : Helicase, C-terminal; R3H domain; DEAD/DEAH box helicase domain; Helicase-associated domain; Domain of unknown function DUF1605 [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55857
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cre12.g492450 30792289 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
OT_06G02830.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
OT_18G01660.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
XM_002500677.1 MICPUN_65643, 65643 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_002503731.1 MICPUN_59722, 59722 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003063815.1 MicpuC2_53611, 53611 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_003063816.1 MicpuC2_53612, 53612 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
XM_003064367.1 MicpuC2_43509, 43509 Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
lcl|BLLF01000257.1_cds_GFH09726.1_4203 HaLaN_04921, GFH09726 DExH-box ATP-dependent RNA helicase DExH3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 648 765
IPR001374 R3H_dom 32 90
IPR007502 Helicase-assoc_dom 838 929
IPR011709 DUF1605 997 1092
IPR011545 DEAD/DEAH_box_helicase_dom 244 400
No external refs found!