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  5. Transcript_contig_55800

Transcript_contig_55800 (55800)


Aliases : 55800

Description : Mitochondrial substrate/solute carrier [Interproscan].


Gene families : OG_01_0000072 (OrthoFinder) Phylogenetic Tree(s): OG0000072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55800
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000553.24 tig00000553_g2095.t1 Solute transport.carrier-mediated transport.MC-type... 0.01 OrthoFinder
Cpa|evm.model.tig00021123.26 tig00021123_g18510.t1 Solute transport.carrier-mediated transport.MC-type... 0.01 OrthoFinder
Cre06.g278750 30779331, UCP1 Solute transport.carrier-mediated transport.MC-type... 0.01 OrthoFinder
OT_07G04300.1 No alias Mitochondrial substrate/solute carrier [Interproscan]. 0.02 OrthoFinder
Sro710_g191000.1 Contig1639.g14772 Kidney mitochondrial carrier protein 1 0.01 OrthoFinder
Vocar.0025s0108.1 32898433 Mitochondrial substrate/solute carrier [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR018108 Mitochondrial_sb/sol_carrier 10 100
IPR018108 Mitochondrial_sb/sol_carrier 108 203
IPR018108 Mitochondrial_sb/sol_carrier 209 294
No external refs found!