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  5. Transcript_contig_55510

Transcript_contig_55510 (55510)


Aliases : 55510

Description : Zinc finger, MYND-type [Interproscan].


Gene families : OG_01_0000408 (OrthoFinder) Phylogenetic Tree(s): OG0000408_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55510
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
lcl|LHPG02000002.1_cds_PRW60632.1_4526 PRW60632 Ankyrin repeat and MYND domain-containing 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60852.1_4380 PRW60852 Ocs element-binding factor 1-like 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59495.1_6439 PRW59495 HIT MYND zinc finger 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56827.1_9698 PRW56827 Zinc finger, MYND-type [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55939.1_10214 PRW55939 Ubiquitin carboxyl-terminal hydrolase 18-like 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56174.1_10139 PRW56174 DNA-3-methyladenine glycosylase 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56311.1_10187 PRW56311 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45512.1_1481 PRW45512 Zinc finger, MYND-type [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39170.1_2766 PRW39170 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR002893 Znf_MYND 739 770
No external refs found!