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  5. Transcript_contig_55399

Transcript_contig_55399 (55399)


Aliases : 55399

Description : Actin family [Interproscan].


Gene families : OG_01_0000106 (OrthoFinder) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55399
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
PTI_03G04390.1 No alias Actin family [Interproscan]. 0.02 OrthoFinder
PTI_15G01980.1 No alias Actin family [Interproscan]. 0.01 OrthoFinder
Sro762_g198640.1 Contig3620.g28005 Actin-66 (Fragment) 0.01 OrthoFinder
SymbC1.scaffold10261.1 10261.1 Actin family [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000700.1_cds_GFH14205.1_8682 HaLaN_10218, GFH14205 Actin family [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR004000 Actin 51 453
No external refs found!