Transcript_contig_55351 (55351)

Aliases : 55351

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].

Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_55351
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
PTI_02G01550.1	No alias	ABC transporter-like; ABC-2 type transporter [Interproscan].	0.01	OrthoFinder
PTI_02G01560.1	No alias	ABC transporter-like; ABC-2 type transporter [Interproscan].	0.01	OrthoFinder
SymbC1.scaffold4237.3	4237.3	ABC-2 type transporter; ABC transporter-like [Interproscan].	0.01	OrthoFinder
lcl\|LHPG02000009.1_cds_PRW56065.1_10007	PRW56065	ABC transporter G family member 22	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498383.1_7336	KAA8498383	ABC transporter G family member 14	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498384.1_7337	KAA8498384	ABC transporter G family member 22	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004476	mannose-6-phosphate isomerase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0005984	disaccharide metabolic process	IEP	Enrichment
BP	GO:0005991	trehalose metabolic process	IEP	Enrichment
BP	GO:0005992	trehalose biosynthetic process	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
BP	GO:0009311	oligosaccharide metabolic process	IEP	Enrichment
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Enrichment
BP	GO:0010970	transport along microtubule	IEP	Enrichment
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Enrichment
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Enrichment
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Enrichment
BP	GO:0030705	cytoskeleton-dependent intracellular transport	IEP	Enrichment
BP	GO:0031503	protein-containing complex localization	IEP	Enrichment
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Enrichment
BP	GO:0042073	intraciliary transport	IEP	Enrichment
BP	GO:0046351	disaccharide biosynthetic process	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
BP	GO:0099111	microtubule-based transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	122	275
IPR013525	ABC_2_trans	420	588

External Links

No external refs found!