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  5. Transcript_contig_55280

Transcript_contig_55280 (55280)


Aliases : 55280

Description : SANT/Myb domain [Interproscan].


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55280
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cre02.g103450 30784922 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cre16.g677382 30777694 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cz06g08120.t1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Cz11g12210.t1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
EOD27187 No alias SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
OT_05G01310.1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
PTI_09G03250.1 No alias SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
PTI_10G00850.1 No alias SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
PTI_17G00510.1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
PTI_29G00320.1 No alias SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
Vocar.0006s0441.1 32894082 Myb-like DNA-binding domain [Interproscan]. 0.03 OrthoFinder
Vocar.0009s0221.1 32893145 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Vocar.0011s0039.1 32895431 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
XM_002501501.1 MICPUN_105509, 105509 SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
XM_002501945.1 MICPUN_108200, 108200 SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000060.1_cds_GFH06860.1_1337 HaLaN_01568, GFH06860 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000133.1_cds_GFH08051.1_2528 HaLaN_02951, GFH08051 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000566.1_cds_GFH13015.1_7492 HaLaN_08814, GFH13015 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000902.1_cds_GFH15798.1_10275 HaLaN_12098, GFH15798 Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497935.1_6888 KAA8497935 Transcription factor MYB3R-5 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008061 chitin binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 62 105
IPR001005 SANT/Myb 10 55
No external refs found!