Aliases : tig00000711_g3379.t1
Description : RNA processing.RNA modification.pseudouridylation.TruA-type tRNA pseudouridine synthase
Gene families : OG_01_0000916 (OrthoFinder) Phylogenetic Tree(s): OG0000916_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cpa|evm.model.tig00000711.19 | |
Cluster | HCCA: Cluster_118 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre13.g591501 | 30784777 | RNA processing.RNA... | 0.03 | OrthoFinder | |
Sro1124_g243880.1 | Contig4358.g32846 | Pseudouridine synthase A | 0.02 | OrthoFinder | |
Sro3028_g342410.1 | Contig4472.g33608 | Pseudouridine synthase A | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0004000 | adenosine deaminase activity | IEP | Enrichment |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Enrichment |
MF | GO:0004175 | endopeptidase activity | IEP | Enrichment |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Enrichment |
MF | GO:0008233 | peptidase activity | IEP | Enrichment |
MF | GO:0008236 | serine-type peptidase activity | IEP | Enrichment |
MF | GO:0008685 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | IEP | Enrichment |
MF | GO:0010309 | acireductone dioxygenase [iron(II)-requiring] activity | IEP | Enrichment |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Enrichment |
MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Enrichment |
MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Enrichment |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | Enrichment |
MF | GO:0017171 | serine hydrolase activity | IEP | Enrichment |
MF | GO:0019239 | deaminase activity | IEP | Enrichment |
MF | GO:0051213 | dioxygenase activity | IEP | Enrichment |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR020097 | PsdUridine_synth_TruA_a/b_dom | 112 | 209 |
No external refs found! |