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  5. Transcript_contig_55210

Transcript_contig_55210 (55210)


Aliases : 55210

Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55210
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.188 tig00000144_g9184.t1 ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000691.35 tig00000691_g3188.t1 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder
Cz01g25030.t1 No alias Helicase, C-terminal; Chromo domain; Domain of unknown... 0.01 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD41895 No alias Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
OT_17G01920.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
PTI_12G03630.1 No alias SLIDE domain; Helicase, C-terminal; SNF2-related,... 0.01 OrthoFinder
Sro154_g070270.1 Contig2716.g21905 ISWI chromatin-remodeling complex ATPase ISW2 0.01 OrthoFinder
Vocar.0032s0115.1 32893725 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
XM_002503125.1 MICPUN_91017, 91017 SNF2 super family 0.02 OrthoFinder
XM_002507782.1 MICPUN_60518, 60518 SNF2 super family 0.02 OrthoFinder
XM_002508085.1 MICPUN_60550, 60550 SNF2 super family 0.01 OrthoFinder
lcl|BLLF01001410.1_cds_GFH19126.1_13603 HaLaN_16027, GFH19126 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58677.1_7830 PRW58677 Chromatin structure-remodeling complex SYD-like isoform X1 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20842.1_5116 PRW20842 ATP-dependent DNA helicase DDM1 isoform X1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 510 619
IPR000330 SNF2_N 192 485
No external refs found!