Transcript_contig_55169 (55169)


Aliases : 55169

Description : Fatty acid desaturase domain; Fatty acid desaturase, N-terminal [Interproscan].


Gene families : OG_01_0000422 (OrthoFinder) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55169
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre01.g038600 30789324, FAD7 Lipid metabolism.fatty acid synthesis.fatty acid... 0.01 OrthoFinder
Cre17.g711150 30782079 Lipid metabolism.fatty acid synthesis.fatty acid... 0.03 OrthoFinder
Cz04g31180.t1 No alias Fatty acid desaturase domain; Fatty acid desaturase,... 0.02 OrthoFinder
EOD26922 No alias Delta 12 fatty acid desaturase [Ensembl]. 0.01 OrthoFinder
EOD29061 No alias Fatty acid desaturase domain [Interproscan]. 0.01 OrthoFinder
PTI_03G04000.1 No alias Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
PTI_17G01900.1 No alias Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
Sro1616_g286240.1 Contig599.g7471 Delta(12) acyl-lipid conjugase (11E,13E-forming) 0.01 OrthoFinder
TP03G00790.1 No alias Fatty acid desaturase domain [Interproscan]. 0.03 OrthoFinder
TP08G03140.1 No alias Fatty acid desaturase domain [Interproscan]. 0.01 OrthoFinder
XM_002505490.1 MICPUN_69560, 69560 Fatty acid desaturase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000177.1_cds_GFH08688.1_3165 HaLaN_03689, GFH08688 Chloroplast glycerolipid omega-3-fatty acid desaturase 0.01 OrthoFinder
lcl|BLLF01001579.1_cds_GFH20127.1_14604 HaLaN_17202, GFH20127 Fatty acid desaturase, N-terminal [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005804 FA_desaturase_dom 118 373
IPR021863 FAS_N 67 107
No external refs found!