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  5. Transcript_contig_55167

Transcript_contig_55167 (55167)


Aliases : 55167

Description : NHL repeat; Thioredoxin-like fold [Interproscan].


Gene families : OG_01_0000024 (OrthoFinder) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55167
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
EOD08432 No alias BTB/POZ domain [Interproscan]. 0.01 OrthoFinder
EOD15816 No alias BTB/POZ domain [Interproscan]. 0.01 OrthoFinder
EOD20790 No alias SMP-30/Gluconolactonase/LRE-like region; BTB/POZ domain... 0.01 OrthoFinder
EOD38811 No alias BTB/POZ domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold1180.4 1180.4 Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012336 Thioredoxin-like_fold 33 128
IPR001258 NHL_repeat 236 261
IPR001258 NHL_repeat 471 498
No external refs found!