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  5. Transcript_contig_55122

Transcript_contig_55122 (55122)


Aliases : 55122

Description : Short-chain dehydrogenase/reductase SDR [Interproscan].


Gene families : OG_01_0000332 (OrthoFinder) Phylogenetic Tree(s): OG0000332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55122
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
lcl|LHPG02000010.1_cds_PRW50804.1_895 PRW50804 Short-chain dehydrogenase reductase SDR 0.02 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05889.1_5930 PRW05889 Short-chain dehydrogenase isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR002347 SDR_fam 8 209
No external refs found!