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Transcript_contig_55061 (55061)


Aliases : 55061

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0003754 (OrthoFinder) Phylogenetic Tree(s): OG0003754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55061
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001027.29 tig00001027_g6401.t1 DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre07.g319750 30775315 DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Dusal.0160s00013.1 33188322 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 357 468
IPR011545 DEAD/DEAH_box_helicase_dom 110 318
No external refs found!