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  5. Transcript_contig_55058

Transcript_contig_55058 (55058)


Aliases : 55058

Description : Zinc finger, PHD-finger; Bromo adjacent homology (BAH) domain; ATPase, AAA-type, core; AAA lid domain [Interproscan].


Gene families : OG_01_0000811 (OrthoFinder) Phylogenetic Tree(s): OG0000811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55058
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000737.5 tig00000737_g3785.t1 Cell cycle.interphase.DNA... 0.04 OrthoFinder
Cpa|evm.model.tig00021070.70 tig00021070_g17875.t1 Cell cycle.interphase.DNA replication.preinitiation.CDC6... 0.03 OrthoFinder
Cre06.g292850 30778792, CDC6 No description available 0.02 OrthoFinder
Cre10.g455600 30789958, ORC1 Cell cycle.interphase.DNA... 0.03 OrthoFinder
Dusal.0095s00014.1 33190268 Hypothetical protein 0.01 OrthoFinder
EOD12119 No alias Bromo adjacent homology (BAH) domain; ATPase, AAA-type,... 0.02 OrthoFinder
EOD31487 No alias Zinc finger, PHD-finger [Interproscan]. 0.03 OrthoFinder
OT_04G01060.1 No alias Methyl-CpG DNA binding; AAA+ ATPase domain; Cdc6,... 0.05 OrthoFinder
OT_04G05240.1 No alias Zinc finger, PHD-finger; Bromo adjacent homology (BAH)... 0.02 OrthoFinder
PTI_01G02210.1 No alias AAA+ ATPase domain [Interproscan]. 0.02 OrthoFinder
Sro395_g133970.1 Contig4272.g32316 Complex subunit 0.03 OrthoFinder
Sro992_g228860.1 Contig4505.g33789 Origin recognition complex subunit 1 0.01 OrthoFinder
TP10G03100.1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
XM_002501862.1 MICPUN_81192, 81192 Cdc6, C-terminal; AAA+ ATPase domain [Interproscan]. 0.03 OrthoFinder
XM_002506404.1 MICPUN_88660, 88660 AAA lid domain; Zinc finger, PHD-finger; ATPase,... 0.03 OrthoFinder
lcl|BLLF01000446.1_cds_GFH11894.1_6371 HaLaN_07472, GFH11894 Origin recognition complex subunit 1 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61222.1_121 PRW61222 Origin recognition complex subunit 1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 166 212
IPR041083 AAA_lid_10 637 671
IPR001025 BAH_dom 237 331
IPR003959 ATPase_AAA_core 461 605
No external refs found!