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  5. Transcript_contig_55026

Transcript_contig_55026 (55026)


Aliases : 55026

Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55026
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.138 tig00000241_g21003.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00021012.22 tig00021012_g17003.t1 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Dusal.0258s00013.1 33192567 SAND domain; SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
Dusal.0991s00002.1 33185743 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD34995 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD41448 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
OT_14G01110.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Vocar.0020s0120.1 32886803 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
lcl|BLLF01002847.1_cds_GFH25556.1_20033 HaLaN_23540, GFH25556 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44334.1_2413 PRW44334 DNA annealing helicase and endonuclease ZRANB3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016556 mRNA modification IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0080009 mRNA methylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 726 827
IPR000330 SNF2_N 364 618
No external refs found!