Transcript_contig_550 (550)

Aliases : 550

Description : DNA topoisomerase, type IA, central; TOPRIM domain [Interproscan].

Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Transcript_contig_550
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
OT_03G04080.1 No alias Zinc finger, CCHC-type; DNA topoisomerase, type IA,... 0.03 OrthoFinder
TP04G06100.1 No alias DNA topoisomerase, type IA, central; TOPRIM domain... 0.02 OrthoFinder
Vocar.0001s1443.1 32884242 TOPRIM domain; DNA topoisomerase, type IA, central... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 165 427
IPR006171 TOPRIM_domain 4 148
No external refs found!