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  5. Transcript_contig_54993

Transcript_contig_54993 (54993)


Aliases : 54993

Description : Biotin carboxylase, C-terminal; Acetyl-CoA carboxylase, central domain; Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain; Biotin/lipoyl attachment; Biotin carboxylase-like, N-terminal domain [Interproscan].


Gene families : OG_01_0000506 (OrthoFinder) Phylogenetic Tree(s): OG0000506_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54993
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
OT_10G03450.1 No alias Biotin carboxylase, C-terminal; Acetyl-CoA carboxylase,... 0.01 OrthoFinder
Sro50_g029050.1 Contig297.g3893 Acetyl-CoA carboxylase 1 0.01 OrthoFinder
SymbC1.scaffold7573.4 7573.4 Acetyl-CoA carboxylase [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006633 fatty acid biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004371 glycerone kinase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006071 glycerol metabolic process IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019400 alditol metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000089 Biotin_lipoyl 740 800
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 273 454
IPR005482 Biotin_COase_C 490 596
IPR013537 AcCoA_COase_cen 801 1196
IPR005481 BC-like_N 102 223
No external refs found!