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  5. Transcript_contig_54970

Transcript_contig_54970 (54970)


Aliases : 54970

Description : Hypothetical protein


Gene families : OG_01_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54970
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000198.2 tig00000198_g16066.t1 Serine/threonine-protein kinase STY13 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001181.27 tig00001181_g7440.t1 Enzyme classification.EC_2 transferases.EC_2.7... 0.01 OrthoFinder
Cpa|evm.model.tig00020961.96 tig00020961_g16715.t1 Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre05.g236216 30783192 Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre08.g384900 30773933 Protein modification.phosphorylation.TKL kinase... 0.02 OrthoFinder
Cz03g23150.t1 No alias Serine-threonine/tyrosine-protein kinase, catalytic... 0.01 OrthoFinder
Sro1048_g235270.1 Contig3784.g29051 Ephrin type-B receptor 3 (Fragment) 0.01 OrthoFinder
SymbC1.scaffold1192.3 1192.3 Protein kinase domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61504.1_502 PRW61504 Serine threonine-kinase CTR1 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60140.1_6169 PRW60140 Serine threonine-kinase CTR1 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57283.1_9045 PRW57283 Serine threonine-kinase STY46 0.01 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33991.1_3028 PRW33991 Serine threonine-kinase CTR1 0.02 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18330.1_5866 PRW18330 Serine threonine-kinase EDR1 0.01 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492576.1_9269 KAA8492576 Serine/threonine-protein kinase HT1 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491913.1_4921 KAA8491913 Putative serine/threonine-protein kinase drkD 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!