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Aliases : tig00000704_g3346.t2
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor
Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000704.61 | |
| Cluster | HCCA: Cluster_129 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre07.g344050 | 30774587 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder | |
| Cz04g09230.t1 | No alias | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.06 | OrthoFinder | |
| EOD09005 | No alias | Hypothetical protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD29254 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.08 | OrthoFinder | |
| OT_08G01420.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.02 | OrthoFinder | |
| OT_14G00400.1 | No alias | Thioredoxin domain; Phosphoadenosine phosphosulphate... | 0.02 | OrthoFinder | |
| PTI_06G04180.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.06 | OrthoFinder | |
| Sro1027_g232980.1 | Contig109.g1249 | Transducin beta-like protein 3 | 0.07 | OrthoFinder | |
| Sro2695_g334900.1 | Contig897.g9510 | Transducin beta-like 3 | 0.02 | OrthoFinder | |
| TP04G06150.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_57084 | 57084 | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0011s0002.1 | 32895390 | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002503015.1 | MICPUN_83206, 83206 | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.06 | OrthoFinder | |
| XM_003058642.1 | MicpuC2_518, 518 | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495510.1_1508 | KAA8495510 | 5'-adenylylsulfate reductase 2, chloroplastic | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003724 | RNA helicase activity | IEP | Enrichment |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Enrichment |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004357 | glutamate-cysteine ligase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004519 | endonuclease activity | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006302 | double-strand break repair | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| No external refs found! |