Transcript_contig_54882 (54882)


Aliases : 54882

Description : Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain [Interproscan].


Gene families : OG_01_0000695 (OrthoFinder) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54882
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000955.11 tig00020703_g13138.t1 Carbohydrate metabolism.starch... 0.01 OrthoFinder
Cpa|evm.model.tig00021589.4 tig00021589_g22709.t1 Carbohydrate metabolism.starch... 0.02 OrthoFinder
Cz10g16050.t1 No alias Glycosyl hydrolase, family 13, catalytic domain;... 0.02 OrthoFinder
Dusal.0008s00025.1 33198885 Glycoside hydrolase, family 13, N-terminal [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56421.1_9744 PRW56421 Isoamylase chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004193 Glyco_hydro_13_N 232 322
IPR006047 Glyco_hydro_13_cat_dom 399 757
No external refs found!