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  5. Transcript_contig_54781

Transcript_contig_54781 (54781)


Aliases : 54781

Description : Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase/branching enzyme, C-terminal all beta [Interproscan].


Gene families : OG_01_0000579 (OrthoFinder) Phylogenetic Tree(s): OG0000579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54781
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
EOD06623 No alias Glycoside hydrolase, family 13, N-terminal [Interproscan]. 0.02 OrthoFinder
EOD06673 No alias Glycoside hydrolase, family 13, N-terminal [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
InterPro domains Description Start Stop
IPR004193 Glyco_hydro_13_N 131 204
IPR006048 A-amylase/branching_C 654 756
IPR006047 Glyco_hydro_13_cat_dom 272 361
No external refs found!