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  5. Transcript_contig_54694

Transcript_contig_54694 (54694)


Aliases : 54694

Description : ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp, N-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54694
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001416.8 tig00001416_g8954.t1 Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020996.22 tig00020996_g16936.t1 Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.02 OrthoFinder
Cz09g12050.t1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.05 OrthoFinder
EOD25362 No alias ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.01 OrthoFinder
OT_07G02070.1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.08 OrthoFinder
OT_14G01120.1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.02 OrthoFinder
SymbC1.scaffold16.59 16.59 Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.02 OrthoFinder
SymbC1.scaffold3099.3 3099.3 Clp, N-terminal; Clp ATPase, C-terminal; ATPase,... 0.06 OrthoFinder
SymbC1.scaffold35783.1 35783.1 ATPase, AAA-type, core; ClpA/ClpB, AAA lid domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold73.29 73.29 Clp, N-terminal; Adaptor protein ClpS, core; Clp ATPase,... 0.03 OrthoFinder
TP01G07700.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.01 OrthoFinder
TP03G02280.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.02 OrthoFinder
Vocar.0029s0077.1 32887567 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.01 OrthoFinder
XM_002505504.1 MICPUN_92311, 92311 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.03 OrthoFinder
lcl|BLLF01001302.1_cds_GFH18442.1_12919 HaLaN_15252, GFH18442 ATPase, AAA-type, core; Clp ATPase, C-terminal [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001856.1_cds_GFH21573.1_16050 HaLaN_18906, GFH21573 AAA domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61387.1_219 PRW61387 ATP-dependent Clp protease ATP-binding subunit-like... 0.04 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59672.1_6479 PRW59672 Chaperone chloroplastic-like 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57345.1_8975 PRW57345 ATP-dependent Clp protease ATP-binding subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 622 797
IPR041546 ClpA/ClpB_AAA_lid 422 523
IPR004176 Clp_R_dom 92 144
IPR004176 Clp_R_dom 168 219
IPR003959 ATPase_AAA_core 284 400
IPR019489 Clp_ATPase_C 803 882
No external refs found!