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  5. Transcript_contig_54658

Transcript_contig_54658 (54658)


Aliases : 54658

Description : Hypothetical protein


Gene families : OG_01_0000313 (OrthoFinder) Phylogenetic Tree(s): OG0000313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54658
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001042.26 tig00001042_g6598.t1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder
EOD12864 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
PTI_22G01390.1 No alias PAS domain; Basic-leucine zipper domain [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496839.1_568 KAA8496839 Serine/threonine-protein kinase nrc-2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!