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  5. Transcript_contig_54536

Transcript_contig_54536 (54536)


Aliases : 54536

Description : Cullin protein, neddylation domain; Cullin, N-terminal [Interproscan].


Gene families : OG_01_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54536
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000157.110 tig00000157_g9709.t1 Cullin-4 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00000157.111 tig00000157_g9709.t1 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020563.190 tig00020563_g11392.t1 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020563.191 tig00020563_g11392.t1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cpa|evm.model.tig00020934.33 tig00020934_g16100.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cre17.g734400 30781960, CUL3 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cz01g09050.t1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
Cz09g29020.t1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
Dusal.0203s00008.1 33199265 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
Dusal.1960s00001.1 33187634 Cullin, N-terminal [Interproscan]. 0.01 OrthoFinder
EOD28143 No alias Cullin, N-terminal; Cullin protein, neddylation domain... 0.04 OrthoFinder
EOD28450 No alias Cullin, N-terminal; Cullin protein, neddylation domain... 0.03 OrthoFinder
OT_04G00480.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
OT_07G00170.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
PTI_04G04250.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
PTI_16G00930.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.01 OrthoFinder
PTI_17G00580.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
TP11G00740.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
XM_002501559.1 MICPUN_106836, 106836 Cullin protein, neddylation domain; Cullin, N-terminal... 0.04 OrthoFinder
XM_002504697.1 MICPUN_84769, 84769 Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
XM_003062494.1 MicpuC2_45869, 45869 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
lcl|BLLF01002375.1_cds_GFH23832.1_18309 HaLaN_21516, GFH23832 CULLIN_2 domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20452.1_5392 PRW20452 Cullin family 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 665 716
IPR001373 Cullin_N 28 633
No external refs found!