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  5. Transcript_contig_54343

Transcript_contig_54343 (54343)


Aliases : 54343

Description : Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan].


Gene families : OG_01_0000476 (OrthoFinder) Phylogenetic Tree(s): OG0000476_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54343
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
EOD40142 No alias Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. 0.01 OrthoFinder
TP04G05450.1 No alias Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. 0.01 OrthoFinder
Vocar.0011s0177.1 32895185 Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56789.1_9557 PRW56789 B-type cyclin isoform A 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 269 391
IPR006671 Cyclin_N 140 267
No external refs found!