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  5. Transcript_contig_54328

Transcript_contig_54328 (54328)


Aliases : 54328

Description : Translation elongation factor EFTu-like, domain 2; 116kDa U5 small nuclear ribonucleoprotein component, N-terminal; Elongation factor EFG, domain V-like; Translation elongation factor EFG/EF2, domain IV; Transcription factor, GTP-binding domain [Interproscan].


Gene families : OG_01_0000224 (OrthoFinder) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54328
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.69 tig00020904_g15202.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cpa|evm.model.tig00021464.39 tig00021464_g21745.t1 Protein biosynthesis.translation elongation.eEF2... 0.02 OrthoFinder
Cre13.g564950 30784137 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder
Cre17.g737250 30781623, EFG5 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder
Cz02g31270.t1 No alias Translation elongation factor EFG/EF2, domain IV;... 0.01 OrthoFinder
Cz04g12070.t1 No alias Translation elongation factor EFTu-like, domain 2;... 0.05 OrthoFinder
EOD10726 No alias Elongation factor EFG, domain V-like; 116kDa U5 small... 0.02 OrthoFinder
OT_14G01740.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.03 OrthoFinder
PTI_06G04210.1 No alias Elongation factor EFG, domain V-like; Transcription... 0.03 OrthoFinder
Sro1027_g233090.1 Contig109.g1260 109 kDa U5 small nuclear ribonucleoprotein component GFL 0.02 OrthoFinder
SymbC1.scaffold8222.1 8222.1 Transcription factor, GTP-binding domain; Elongation... 0.01 OrthoFinder
Vocar.0006s0331.1 32894198 Elongation factor EFG, domain V-like; Translation... 0.03 OrthoFinder
XM_003063556.1 MicpuC2_29848, 29848 Transcription factor, GTP-binding domain; Elongation... 0.02 OrthoFinder
lcl|BLLF01000115.1_cds_GFH07777.1_2254 HaLaN_02629, GFH07777 Tr-type G domain-containing protein 0.02 OrthoFinder
lcl|BLLF01002710.1_cds_GFH25076.1_19553 HaLaN_22980, GFH25076 Tr-type G domain-containing protein 0.01 OrthoFinder
lcl|BLLF01006069.1_cds_GFH31923.1_26400 HaLaN_31054, GFH31923 Elongation factor 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60836.1_4725 PRW60836 116 kDa U5 small nuclear ribonucleo component-like isoform A 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
InterPro domains Description Start Stop
IPR005517 Transl_elong_EFG/EF2_IV 723 841
IPR004161 EFTu-like_2 510 583
IPR000795 T_Tr_GTP-bd_dom 144 386
IPR031950 EFTUD2_N 5 123
IPR000640 EFG_V-like 844 932
No external refs found!