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  5. Transcript_contig_54290

Transcript_contig_54290 (54290)


Aliases : 54290

Description : PPM-type phosphatase domain [Interproscan].


Gene families : OG_01_0000057 (OrthoFinder) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54290
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.85 tig00000403_g344.t1 Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000704.67 tig00000704_g3351.t1 Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00021462.2 tig00021462_g21568.t1 Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre03.g211073 30787032 Protein modification.dephosphorylation.serine/threonine... 0.02 OrthoFinder
Cz01g00100.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.04 OrthoFinder
Cz06g26140.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Cz07g08100.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Cz10g08070.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Cz11g01170.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Cz17g01030.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Dusal.0229s00015.1 33187449 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Dusal.0664s00002.1 33189412 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
EOD24523 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
PTI_08G02920.1 No alias PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
Sro414_g138260.1 Contig453.g6101 Linked kinase-associated serine/threonine phosphatase 2C 0.01 OrthoFinder
SymbC1.scaffold8543.1 8543.1 PPM-type phosphatase domain; Cold-shock protein,... 0.01 OrthoFinder
Vocar.0008s0010.1 32897406 PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0013s0168.1 32896256 PPM-type phosphatase domain [Interproscan]. 0.04 OrthoFinder
Vocar.0022s0165.1 32891855 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000950.1_cds_GFH16127.1_10604 HaLaN_12491, GFH16127 Protein phosphatase 2C catalytic subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005516 calmodulin binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 411 601
No external refs found!