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  5. Transcript_contig_54285

Transcript_contig_54285 (54285)


Aliases : 54285

Description : Zinc finger, CCCH-type [Interproscan].


Gene families : OG_01_0000371 (OrthoFinder) Phylogenetic Tree(s): OG0000371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54285
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021590.10 tig00021590_g22767.t1 No description available 0.02 OrthoFinder
Cre03.g146267 30786551 RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder
Cz09g22110.t1 No alias Zinc finger, CCCH-type [Interproscan]. 0.02 OrthoFinder
Cz10g10230.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz10g19150.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz17g10050.t1 No alias Zinc finger, CCCH-type [Interproscan]. 0.03 OrthoFinder
Vocar.0024s0207.1 32890282 Hypothetical protein 0.01 OrthoFinder
Vocar.0028s0107.1 32895601 Zinc finger, CCCH-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 100 121
No external refs found!