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  5. Transcript_contig_54277

Transcript_contig_54277 (54277)


Aliases : 54277

Description : CDC48, N-terminal subdomain; AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core; CDC48, domain 2 [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54277
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cre06.g269950 30778959, CDC48 Cell division control protein 48 homolog E... 0.03 OrthoFinder
Cre09.g398550 30781371 Cell division control protein 48 homolog C... 0.01 OrthoFinder
Cz02g33220.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Cz09g19130.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Dusal.0008s00033.1 33198881 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.03 OrthoFinder
Dusal.0094s00012.1 33187397 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
OT_01G03790.1 No alias AAA ATPase, AAA+ lid domain; Vps4 oligomerisation,... 0.01 OrthoFinder
OT_02G03140.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
PTI_04G04960.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
PTI_11G01980.1 No alias AAA ATPase, AAA+ lid domain; CDC48, N-terminal... 0.02 OrthoFinder
Sro157_g071160.1 Contig2362.g19406 Spermatogenesis-associated protein 5-like protein 1 0.01 OrthoFinder
Sro287_g108550.1 Contig252.g3096 Transitional endoplasmic reticulum ATPase 0.03 OrthoFinder
Sro31_g020450.1 Contig420.g5640 Peroxisomal biogenesis factor 6 0.01 OrthoFinder
Sro66_g037380.1 Contig399.g5408 Transitional endoplasmic reticulum ATPase 0.01 OrthoFinder
Sro98_g050450.1 Contig3362.g26337 Transitional endoplasmic reticulum ATPase 0.01 OrthoFinder
TP01G02020.1 No alias ATPase, AAA-type, core; CDC48, domain 2; AAA ATPase,... 0.01 OrthoFinder
XM_002507191.1 MICPUN_78168, 78168 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499724.1_8677 KAA8499724 Cell division cycle protein 48-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 140 201
IPR041569 AAA_lid_3 681 720
IPR041569 AAA_lid_3 405 446
IPR003338 CDC4_N-term_subdom 36 119
IPR003959 ATPase_AAA_core 526 659
IPR003959 ATPase_AAA_core 253 382
No external refs found!