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  5. Transcript_contig_54258

Transcript_contig_54258 (54258)


Aliases : 54258

Description : Bromodomain [Interproscan].


Gene families : OG_01_0001925 (OrthoFinder) Phylogenetic Tree(s): OG0001925_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54258
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Cz03g26160.t1 No alias Bromodomain [Interproscan]. 0.01 OrthoFinder
Cz12g23190.t1 No alias Bromodomain [Interproscan]. 0.01 OrthoFinder
Dusal.0348s00011.1 33203501 Bromodomain [Interproscan]. 0.01 OrthoFinder
Dusal.1064s00005.1 33196348 Bromodomain [Interproscan]. 0.01 OrthoFinder
OT_03G04300.1 No alias Bromodomain [Interproscan]. 0.01 OrthoFinder
Vocar.0049s0024.1 32886549 Bromodomain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56767.1_9521 PRW56767 Bromodomain-containing 9 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498212.1_7165 KAA8498212 Transcription factor GTE10 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001487 Bromodomain 351 430
No external refs found!