Transcript_contig_54251 (54251)


Aliases : 54251

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0003505 (OrthoFinder) Phylogenetic Tree(s): OG0003505_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54251
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021319.66 tig00021319_g20258.t1 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder
lcl|BLLF01000506.1_cds_GFH12464.1_6941 HaLaN_08161, GFH12464 THO complex 3 G protein beta subunit 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 179 216
IPR001680 WD40_repeat 56 92
No external refs found!