1. Home
  2. Species
  3. Chlorella vulgaris
  4. Sequence
  5. Transcript_contig_54238

Transcript_contig_54238 (54238)


Aliases : 54238

Description : Coatomer beta subunit, appendage platform domain; Coatomer beta subunit, C-terminal; Clathrin/coatomer adaptor, adaptin-like, N-terminal [Interproscan].


Gene families : OG_01_0002435 (OrthoFinder) Phylogenetic Tree(s): OG0002435_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54238
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.156 tig00020553_g10647.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cre04.g217921 30791161, COPB1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Cz05g37150.t1 No alias Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
Dusal.0035s00026.1 33196664 Coatomer beta subunit, appendage platform domain;... 0.05 OrthoFinder
EOD12644 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.03 OrthoFinder
EOD12708 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.03 OrthoFinder
PTI_09G00360.1 No alias Coatomer beta subunit, C-terminal; Coatomer beta... 0.05 OrthoFinder
Sro1540_g280870.1 Contig2880.g23009 Coatomer subunit beta 0.04 OrthoFinder
SymbC1.scaffold1781.8 1781.8 Malic enzyme, N-terminal domain; Clathrin/coatomer... 0.01 OrthoFinder
Vocar.0046s0045.1 32892975 Coatomer beta subunit, appendage platform domain;... 0.01 OrthoFinder
XM_002501869.1 MICPUN_104806, 104806 Coatomer subunit beta (BCOP) 0.02 OrthoFinder
XM_003057574.1 MicpuC2_32783, 32783 Coatomer subunit beta (BCOP) 0.01 OrthoFinder
lcl|BLLF01001130.1_cds_GFH17326.1_11803 HaLaN_13936, GFH17326 Beta-coat protein 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57265.1_8886 PRW57265 Coatomer subunit beta-1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 20 471
IPR011710 Coatomer_bsu_C 682 820
IPR029446 COPB1_appendage_platform_dom 826 953
No external refs found!