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  5. Transcript_contig_54233

Transcript_contig_54233 (54233)


Aliases : 54233

Description : ABC transporter-like [Interproscan].


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54233
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001368.15 tig00001368_g8414.t1 ABC transporter D family member 2, chloroplastic... 0.01 OrthoFinder
Cre10.g439000 30790389 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
PTI_19G02220.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Sro164_g073630.1 Contig4339.g32737 D family member 2, chloroplastic 0.01 OrthoFinder
Transcript_contig_57585 57585 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
XM_003061314.1 MicpuC2_1313, 1313 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498816.1_7769 KAA8498816 ABC transporter D family member 2, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 70 177
No external refs found!