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  5. Transcript_contig_54092

Transcript_contig_54092 (54092)


Aliases : 54092

Description : Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain [Interproscan].


Gene families : OG_01_0000695 (OrthoFinder) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54092
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021589.4 tig00021589_g22709.t1 Carbohydrate metabolism.starch... 0.01 OrthoFinder
Cz03g36130.t1 No alias Glycoside hydrolase, family 13, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497304.1_1033 KAA8497304 Isoamylase 1, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004193 Glyco_hydro_13_N 90 190
IPR006047 Glyco_hydro_13_cat_dom 272 380
No external refs found!