Transcript_contig_54040 (54040)


Aliases : 54040

Description : U box domain; WD40 repeat [Interproscan].


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54040
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000404.28 tig00000404_g390.t1 Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001000.22 tig00001000_g6184.t1 No description available 0.01 OrthoFinder
Cre03.g178550 30787129 Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder
Cre17.g743847 30782211 No description available 0.02 OrthoFinder
Cz04g25190.t1 No alias U box domain; RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Cz17g14120.t1 No alias U box domain [Interproscan]. 0.01 OrthoFinder
EOD26829 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD34803 No alias U box domain [Interproscan]. 0.04 OrthoFinder
EOD36652 No alias U box domain [Interproscan]. 0.03 OrthoFinder
EOD40992 No alias U box domain [Interproscan]. 0.04 OrthoFinder
Sro4_g002930.1 Contig3815.g29211 Putative E3 ubiquitin-protein ligase LIN 0.01 OrthoFinder
XM_002502612.1 MICPUN_58878, 58878 U box domain [Interproscan]. 0.01 OrthoFinder
XM_002507390.1 MICPUN_54846, 54846 U box domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32687.1_3960 PRW32687 Zinc finger CCCH domain-containing 56-like 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20571.1_5453 PRW20571 WD40 repeat 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 78 148
IPR001680 WD40_repeat 331 366
IPR001680 WD40_repeat 253 286
IPR001680 WD40_repeat 412 446
IPR001680 WD40_repeat 291 326
IPR001680 WD40_repeat 211 246
IPR001680 WD40_repeat 371 406
IPR001680 WD40_repeat 175 206
No external refs found!