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Transcript_contig_54039 (54039)


Aliases : 54039

Description : NodB homology domain [Interproscan].


Gene families : OG_01_0001088 (OrthoFinder) Phylogenetic Tree(s): OG0001088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54039
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_57512 57512 NodB homology domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61372.1_25 PRW61372 Polysaccharide deacetylase 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61614.1_423 PRW61614 Chitin 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58939.1_6857 PRW58939 LysM domain; NodB homology domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56282.1_10029 PRW56282 NodB homology domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05840.1_5994 PRW05840 NodB homology domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
InterPro domains Description Start Stop
IPR002509 NODB_dom 46 171
No external refs found!