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  5. Transcript_contig_54009

Transcript_contig_54009 (54009)


Aliases : 54009

Description : DNA polymerase alpha/delta/epsilon, subunit B [Interproscan].


Gene families : OG_01_0003987 (OrthoFinder) Phylogenetic Tree(s): OG0003987_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54009
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001107.10 tig00001107_g7095.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.01 OrthoFinder
Cre01.g017450 30788627 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Sro92_g047960.1 Contig486.g6556 Polymerase alpha subunit B 0.02 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18370.1_5873 PRW18370 DNA polymerase alpha subunit B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR007185 DNA_pol_a/d/e_bsu 354 565
No external refs found!