Transcript_contig_53936 (53936)


Aliases : 53936

Description : Helicase, C-terminal; SNF2-related, N-terminal domain; Chromo domain [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53936
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.188 tig00000144_g9184.t1 ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00000350.9 tig00000350_g24309.t1 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cpa|evm.model.tig00000691.35 tig00000691_g3188.t1 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021623.13 tig00021623_g23013.t1 RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder
Cre08.g377200 30773522 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre16.g687301 30777125 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz03g32130.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
Cz04g03240.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Cz04g34020.t1 No alias Helicase, C-terminal; Chromo domain; SNF2-related,... 0.03 OrthoFinder
EOD04122 No alias Helicase, C-terminal; Zinc finger, PHD-finger;... 0.01 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD41894 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD41895 No alias Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
OT_01G05670.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
OT_06G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.01 OrthoFinder
Sro125_g060200.1 Contig2833.g22731 Chromodomain-helicase-DNA-binding protein 0.01 OrthoFinder
XM_002507782.1 MICPUN_60518, 60518 SNF2 super family 0.03 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20842.1_5116 PRW20842 ATP-dependent DNA helicase DDM1 isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR023780 Chromo_domain 366 418
IPR023780 Chromo_domain 440 487
IPR001650 Helicase_C 850 963
IPR000330 SNF2_N 537 818
No external refs found!