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  5. Transcript_contig_53771

Transcript_contig_53771 (53771)


Aliases : 53771

Description : Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone domain [Interproscan].


Gene families : OG_01_0001485 (OrthoFinder) Phylogenetic Tree(s): OG0001485_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53771
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cre12.g492950 30792262, RIR1 Nucleotide metabolism.deoxynucleotide... 0.03 OrthoFinder
Cz10g19230.t1 No alias ATP-cone domain; Ribonucleotide reductase large subunit,... 0.02 OrthoFinder
EOD13106 No alias Ribonucleotide reductase large subunit, C-terminal... 0.02 OrthoFinder
OT_01G00090.1 No alias Ribonucleotide reductase large subunit, C-terminal;... 0.04 OrthoFinder
PTI_01G04160.1 No alias Ribonucleotide reductase large subunit, C-terminal;... 0.02 OrthoFinder
Sro399_g134840.1 Contig279.g3611 Ribonucleoside-diphosphate reductase large 0.04 OrthoFinder
TP04G01330.1 No alias Ribonucleotide reductase large subunit, N-terminal;... 0.01 OrthoFinder
Vocar.0031s0085.1 32890180 ATP-cone domain; Ribonucleotide reductase large subunit,... 0.02 OrthoFinder
XM_002507347.1 MICPUN_93299, 93299 Ribonucleoside-diphosphate reductase 0.01 OrthoFinder
lcl|BLLF01000014.1_cds_GFH05936.1_413 HaLaN_00482, GFH05936 Ribonucleoside-diphosphate reductase 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496054.1_2052 KAA8496054 Ribonucleoside-diphosphate reductase large subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000788 RNR_lg_C 216 755
IPR013509 RNR_lsu_N 142 212
IPR005144 ATP-cone_dom 1 89
No external refs found!