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  5. Transcript_contig_53744

Transcript_contig_53744 (53744)


Aliases : 53744

Description : MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].


Gene families : OG_01_0002239 (OrthoFinder) Phylogenetic Tree(s): OG0002239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53744
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.164 tig00000144_g9157.t1 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.05 OrthoFinder
Cre07.g316850 30774860, MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.06 OrthoFinder
Cz01g46020.t1 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.07 OrthoFinder
Cz01g46030.t1 No alias MCM N-terminal domain; MCM OB domain; MCM domain [Interproscan]. 0.06 OrthoFinder
Dusal.0005s00042.1 33196920 MCM N-terminal domain; MCM domain; MCM OB domain; MCM,... 0.02 OrthoFinder
EOD16047 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.04 OrthoFinder
EOD37691 No alias MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan]. 0.02 OrthoFinder
OT_14G01130.1 No alias MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.05 OrthoFinder
Sro408_g136940.1 Contig3193.g25229 Licensing factor MCM4 0.01 OrthoFinder
Vocar.0003s0114.1 32889118 MCM, AAA-lid domain; MCM N-terminal domain; MCM OB... 0.06 OrthoFinder
lcl|BLLF01000050.1_cds_GFH06666.1_1143 HaLaN_01335, GFH06666 DNA helicase 0.03 OrthoFinder
lcl|BLLF01002444.1_cds_GFH24102.1_18579 HaLaN_21829, GFH24102 DNA helicase 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59221.1_7052 PRW59221 DNA replication licensing factor MCM4 0.09 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492449.1_9142 KAA8492449 DNA replication licensing factor mcm4-B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR027925 MCM_N 132 224
IPR001208 MCM_dom 451 669
IPR033762 MCM_OB 231 359
No external refs found!