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  5. Transcript_contig_53743

Transcript_contig_53743 (53743)


Aliases : 53743

Description : RING-type zinc-finger, LisH dimerisation motif; SRA-YDG; Zinc finger, C3HC4 type (RING finger) [Interproscan].


Gene families : OG_01_0004043 (OrthoFinder) Phylogenetic Tree(s): OG0004043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53743
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001024.15 tig00001024_g6324.t1 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g163850 30788295 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz03g08240.t1 No alias SRA-YDG; Zinc finger, C3HC4 RING-type; RING-type... 0.02 OrthoFinder
Dusal.0767s00006.1 33187777 RING-type zinc-finger, LisH dimerisation motif; SRA-YDG;... 0.02 OrthoFinder
Vocar.0071s0016.1 32896176 Zinc finger, C3HC4 type (RING finger); SRA-YDG [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56721.1_9631 PRW56721 E3 ubiquitin-ligase ORTHRUS 2-like 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR003105 SRA_YDG 202 351
IPR027370 Znf-RING_LisH 443 469
No external refs found!