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  5. Transcript_contig_53738

Transcript_contig_53738 (53738)


Aliases : 53738

Description : MCM, AAA-lid domain; MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].


Gene families : OG_01_0003371 (OrthoFinder) Phylogenetic Tree(s): OG0003371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53738
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cre06.g295700 30778933, MCM3 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.09 OrthoFinder
Cz08g29130.t1 No alias MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.09 OrthoFinder
EOD39699 No alias MCM OB domain; MCM N-terminal domain; MCM, AAA-lid... 0.03 OrthoFinder
PTI_03G02720.1 No alias MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan]. 0.04 OrthoFinder
Sro26_g017530.1 Contig2432.g19924 Licensing factor MCM3 0.02 OrthoFinder
TP06G01060.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.02 OrthoFinder
Vocar.0021s0184.1 32896084 MCM N-terminal domain; MCM, AAA-lid domain; MCM OB... 0.06 OrthoFinder
XM_002507194.1 MICPUN_77461, 77461 MCM domain; MCM, AAA-lid domain; MCM OB domain; MCM... 0.01 OrthoFinder
lcl|BLLF01000441.1_cds_GFH11838.1_6315 HaLaN_07407, GFH11838 DNA helicase 0.04 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44413.1_2299 PRW44413 DNA replication licensing factor MCM3 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493736.1_4498 KAA8493736 DNA replication licensing factor mcm3 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR041562 MCM_lid 566 645
IPR033762 MCM_OB 118 247
IPR001208 MCM_dom 286 508
IPR027925 MCM_N 12 107
No external refs found!