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  5. Transcript_contig_3118

Transcript_contig_3118 (3118)


Aliases : 3118

Description : BRCT domain [Interproscan].


Gene families : OG_01_0001056 (OrthoFinder) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_3118
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
Cre07.g334650 30774368 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.01 OrthoFinder
Cz15g17090.t1 No alias BRCT domain [Interproscan]. 0.01 OrthoFinder
Vocar.0013s0251.1 32896221 Zinc finger, C3HC4 RING-type [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44310.1_2215 PRW44310 BRCA1-associated RING domain 1-like 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001357 BRCT_dom 73 138
No external refs found!