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  5. Transcript_contig_2488

Transcript_contig_2488 (2488)


Aliases : 2488

Description : NAD(P)-binding Rossmann-like domain [Interproscan].


Gene families : OG_01_0000207 (OrthoFinder) Phylogenetic Tree(s): OG0000207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_2488
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 tig00001095_g7025.t1 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00001258.10 tig00001258_g7832.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020723.8 tig00020723_g13427.t1 No description available 0.01 OrthoFinder
EOD14379 No alias NAD(P)-binding Rossmann-like domain [Interproscan]. 0.02 OrthoFinder
EOD29391 No alias NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
PTI_06G02910.1 No alias Amine oxidase [Interproscan]. 0.01 OrthoFinder
Sro1559_g282470.1 Contig1268.g11842 Prolycopene isomerase 2, chloroplastic 0.02 OrthoFinder
TP03G05800.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
TP05G02600.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder
Vocar.0018s0001.1 32898723 Amine oxidase [Interproscan]. 0.02 OrthoFinder
XM_003054830.1 MicpuC2_50019, 50019 NAD(P)-binding Rossmann-like domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000127.1_cds_GFH07954.1_2431 HaLaN_02839, GFH07954 Prolycopene isomerase, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000143.1_cds_GFH08171.1_2648 HaLaN_03092, GFH08171 Putative chloroplast carotenoid isomerase 0.01 OrthoFinder
lcl|BLLF01000143.1_cds_GFH08172.1_2649 HaLaN_03093, GFH08172 Putative chloroplast carotenoid isomerase 0.02 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10007.1_4484 HaLaN_05249, GFH10007 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33144.1_3623 PRW33144 Carotene isomerase 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497091.1_820 KAA8497091 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492436.1_9129 KAA8492436 Prolycopene isomerase, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005542 folic acid binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!