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  5. Transcript_contig_2212

Transcript_contig_2212 (2212)


Aliases : 2212

Description : ER membrane protein complex subunit 1, C-terminal; Pyrrolo-quinoline quinone repeat [Interproscan].


Gene families : OG_01_0002948 (OrthoFinder) Phylogenetic Tree(s): OG0002948_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_2212
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cz09g16190.t1 No alias Pyrrolo-quinoline quinone repeat; ER membrane protein... 0.03 OrthoFinder
Dusal.0055s00001.1 33187672 ER membrane protein complex subunit 1, C-terminal [Interproscan]. 0.01 OrthoFinder
Sro426_g140400.1 Contig1720.g15385 Membrane protein complex subunit 1 0.01 OrthoFinder
XM_002501948.1 MICPUN_81588, 81588 ER membrane protein complex subunit 1, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59755.1_6330 PRW59755 ER membrane complex subunit 1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR011678 EMC1_C 738 921
IPR002372 PQQ_repeat 47 164
No external refs found!