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  5. Transcript_contig_1667

Transcript_contig_1667 (1667)


Aliases : 1667

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0003998 (OrthoFinder) Phylogenetic Tree(s): OG0003998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_1667
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cre01.g036100 30788803 No description available 0.02 OrthoFinder
Dusal.0045s00003.1 33191628 WD40 repeat [Interproscan]. 0.01 OrthoFinder
OT_09G02250.1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
UNPLg00207.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003059195.1 MicpuC2_47557, 47557 WD40 repeat [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494444.1_2974 KAA8494444 Denticleless protein-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 224 250
IPR001680 WD40_repeat 367 401
IPR001680 WD40_repeat 323 356
IPR001680 WD40_repeat 141 178
No external refs found!