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  5. Transcript_contig_1221

Transcript_contig_1221 (1221)


Aliases : 1221

Description : Mono-functional DNA-alkylating methyl methanesulfonate N-term [Interproscan].


Gene families : OG_01_0001824 (OrthoFinder) Phylogenetic Tree(s): OG0001824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_1221
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cre13.g573450 30784541 Probable cleavage and polyadenylation specificity factor... 0.01 OrthoFinder
Cz09g16050.t1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.01 OrthoFinder
XM_003062240.1 MicpuC2_29097, 29097 Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
CC GO:0000178 exosome (RNase complex) IEP Enrichment
CC GO:0000228 nuclear chromosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!