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  5. Cpa|evm.model.tig00000615.67

Cpa|evm.model.tig00000615.67 (tig00000615_g2597.t1)


Aliases : tig00000615_g2597.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Sof1 assembly factor


Gene families : OG_01_0004098 (OrthoFinder) Phylogenetic Tree(s): OG0004098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000615.67
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cre07.g318702 30774297 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cz01g18250.t1 No alias WD40 repeat; Sof1-like protein [Interproscan]. 0.07 OrthoFinder
Dusal.0025s00044.1 33200701 WD40 repeat; Sof1-like protein [Interproscan]. 0.03 OrthoFinder
EOD31003 No alias WD40 repeat; Sof1-like protein [Interproscan]. 0.02 OrthoFinder
OT_12G01980.1 No alias Sof1-like protein; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro2616_g332730.1 Contig3376.g26420 And CUL4-associated factor 13 0.05 OrthoFinder
TP08G02260.1 No alias WD40 repeat; Sof1-like protein [Interproscan]. 0.02 OrthoFinder
Vocar.0003s0064.1 32889161 WD40 repeat; Sof1-like protein [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001379.1_cds_GFH18918.1_13395 HaLaN_15793, GFH18918 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20303.1_5754 PRW20303 DDB1-and CUL4-associated factor 13 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 315 351
IPR001680 WD40_repeat 61 95
IPR001680 WD40_repeat 100 136
IPR001680 WD40_repeat 276 308
IPR007287 Sof1 352 438
No external refs found!