lcl|LHPG02000029.1_cds_PRW05784.1_6102 (PRW05784)

Aliases : PRW05784

Description : DEAD-box ATP-dependent RNA helicase 39

Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|LHPG02000029.1_cds_PRW05784.1_6102
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g436650	30789761	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cz06g11130.t1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
Dusal.0045s00001.1	33191641	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
Dusal.0225s00011.1	33185188	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
OT_05G03300.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.05	OrthoFinder
OT_10G03270.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
PTI_20G02340.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.05	OrthoFinder
TP12G00750.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
Vocar.0001s0986.1	32885925	DEAD/DEAH box helicase domain; Helicase, C-terminal...	0.02	OrthoFinder
Vocar.0001s1340.1	32885040	DEAD/DEAH box helicase domain; Helicase, C-terminal...	0.03	OrthoFinder
XM_002503395.1	MICPUN_59763, 59763	Helicase, C-terminal; K Homology domain, type 1;...	0.06	OrthoFinder
XM_003056811.1	MicpuC2_56357, 56357	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Enrichment
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0004126	cytidine deaminase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0005991	trehalose metabolic process	IEP	Enrichment
BP	GO:0005992	trehalose biosynthetic process	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Enrichment
BP	GO:0006216	cytidine catabolic process	IEP	Enrichment
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0009119	ribonucleoside metabolic process	IEP	Enrichment
BP	GO:0009164	nucleoside catabolic process	IEP	Enrichment
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009972	cytidine deamination	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	Enrichment
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	Enrichment
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0030488	tRNA methylation	IEP	Enrichment
MF	GO:0031406	carboxylic acid binding	IEP	Enrichment
MF	GO:0031418	L-ascorbic acid binding	IEP	Enrichment
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
CC	GO:0034708	methyltransferase complex	IEP	Enrichment
BP	GO:0042454	ribonucleoside catabolic process	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
CC	GO:0043527	tRNA methyltransferase complex	IEP	Enrichment
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0046087	cytidine metabolic process	IEP	Enrichment
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Enrichment
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Enrichment
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Enrichment
BP	GO:0046351	disaccharide biosynthetic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
MF	GO:0048029	monosaccharide binding	IEP	Enrichment
BP	GO:0051189	prosthetic group metabolic process	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901658	glycosyl compound catabolic process	IEP	Enrichment
CC	GO:1990234	transferase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	96	277
IPR001650	Helicase_C	313	427

External Links

No external refs found!

lcl|LHPG02000029.1_cds_PRW05784.1_6102 (PRW05784)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation