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  5. lcl|LHPG02000028.1_cds_PRW05849.1_5992

lcl|LHPG02000028.1_cds_PRW05849.1_5992 (PRW05849)


Aliases : PRW05849

Description : Nucleic acid-binding isoform A


Gene families : OG_01_0000383 (OrthoFinder) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000028.1_cds_PRW05849.1_5992
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Cre17.g716050 30781996 No description available 0.02 OrthoFinder
Cz19g10130.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Sro5_g004670.1 Contig4001.g30782 AAA 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
MF GO:0004788 thiamine diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0030975 thiamine binding IEP Enrichment
BP GO:0042357 thiamine diphosphate metabolic process IEP Enrichment
CC GO:0070449 elongin complex IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 1243 1329
IPR002562 3'-5'_exonuclease_dom 785 971
No external refs found!