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  5. lcl|LHPG02000027.1_cds_PRW05936.1_5959

lcl|LHPG02000027.1_cds_PRW05936.1_5959 (PRW05936)


Aliases : PRW05936

Description : Squamosa promoter binding


Gene families : OG_01_0000101 (OrthoFinder) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000027.1_cds_PRW05936.1_5959
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cre07.g345050 30775147 RNA biosynthesis.transcriptional activation.SBP... 0.03 OrthoFinder
Transcript_contig_59102 59102 SBP domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_82198 82198 SBP domain [Interproscan]. 0.04 OrthoFinder
XM_003063328.1 MicpuC2_52944, 52944 SBP domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
BP GO:0019321 pentose metabolic process IEP Enrichment
BP GO:0019566 arabinose metabolic process IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0046373 L-arabinose metabolic process IEP Enrichment
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004333 SBP_dom 49 122
No external refs found!